i honestly havent payed attention to the size of the wire connecting the two batteries on my thrid gen, but on my 2nd gen the wire was massive, while the alt cable was smaller. if thats the case, you may see a difference just upgrading the one, but if they are both small, do them both. also, dont forget the ground wires. those are important as well. you may even want to consider adding a ground cable for the alternator. seems like a lot of work but it does make a difference.