I ran my wiring for the gauges through where the factory harness is, brown cable for pyro and a bundle taped together if you look closely at the back:
My truck is a stick, later after more mods I ran more wiring through an empty grommet, in the following picture the grommet with the grey cable is unused, if your truck is an auto this pic shows you a good spot to use, where the arrows are:
Here's a good "how to" link for installing gauges:
Gauge Installations at DieselManor- 2003-2007 5.9L Cummins