I did that on my 2000 chevy tahoe with no problems. I would leave one fan running to maintain air flow through the intercooler and the other cycle for temp.
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2000 2500 2wd 356HP 726TQ
(BHAF, Boost, EGT, FP Gauges, Breather bottle delete, Fass 150/150, Fireball 150's, Phat Shaft 62, Some Billet Trans Parts by TRE, XZT+, 4" exhaust, 2" Level, 315/75-16)
03 Jetta TDI 5 spd "
Click here for TDICLUB Profile"
903 Miles on 15.03 Gallons.